Our processed data

These files contain the expression data and labels for all cells that we use in our database. We have processed these uniformly, using the same alignment, quantification, and normalization procedure to get RPKM values. Please use "load_data_example.py" and follow the instructions to retrieve the data.

This table lists all studies provided in the following data, with cell counts, 0-indexed start and (inclusive) end rows, and links to GEO or ArrayExpress pages for each study.

Updated: 2018-08-28

scRNA-seq pipeline prerequisites