Query Results
Interactive Row Dendrogram
- Hover over the row dendrogram and click on a highlighted sub-tree to select the corresponding query cluster.
- Please select a query cluster first to enable other features!
Škuta, C.; Bartůněk, P.; Svozil, D. InCHlib – interactive cluster heatmap for web applications. Journal of Cheminformatics 2014, 6 (44), DOI: 10.1186/s13321-014-0044-4.
Nearest Neighbors
· A histogram of the nearest neighbours to the entire set of query cells.
Plotly Technologies Inc. Collaborative data science. Montréal, QC, 2015. https://plot.ly
Specific Cell-type Results
· Heatmap of query cells vs differentially expression genes of the chosen cell-type (feature available only on selected cell-types).
Škuta, C.; Bartůněk, P.; Svozil, D. InCHlib – interactive cluster heatmap for web applications. Journal of Cheminformatics 2014, 6 (44), DOI: 10.1186/s13321-014-0044-4.
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Toggle Legend Items
· Cell types and anatomical features (CL Ontology) can be toggled on the legend.
- Click and drag over nodes to zoom. - Hover to display GEO ids.
Plotly Technologies Inc. Collaborative data science. Montréal, QC, 2015. https://plot.ly
Draggable Ontology Graph
- Hover over the nodes for definitions.- Drag any node to achieve a proper layout.
- Differential Expression results are only available for a selected GREEN node.
- Please deselect a node before you want to choose another node.
D3: Data-Driven Documents. Michael Bostock, Vadim Ogievetsky, Jeffrey Heer. IEEE Trans. Visualization & Comp. Graphics (Proc. InfoVis), 2011
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Metadata
Differential Expression Genes Heatmap
· Displays RPKM heatmap for the top/bottom 50 most signicantly differentially expressed genes for selected cell type and selected query sub-cluster.
- Scroll on the heatmap to zoom and drag to move the heatmap. - Hover over gene to display information for homologous human genes.
- Please select a green node in the Ontology Graph tab to see results here
Fernandez, N. F. et al. Clustergrammer, a web-based heatmap visualization and analysis tool for high-dimensional biological data. Sci. Data 4:170151 doi: 10.1038/sdata.2017.151 (2017).